PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0032ss02410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 177aa    MW: 19735.8 Da    PI: 9.9851
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0032ss02410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY126.83e-39251455136
              YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                         ++e+vCyv+CnfCntilavsvP++sl+++vtvrCGhC++llsvn+  + q  + ++       ++++++l +ee + k+  +++++ ++  
  Vang0032ss02410.1  25 MATERVCYVHCNFCNTILAVSVPYNSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDP------QSQKQHLSFEEPSSKELGSSSSKCNKIA 110
                        689*******************************************999999999885......3455566666666666655555555555 PP

              YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikee 136
                        +     e  ++e pr+pp irP ekr rvPsaynrfi   
  Vang0032ss02410.1 111 PF----EAVEHEQPRIPP-IRPTEKRHRVPSAYNRFINKS 145
                        54....446678899999.9*****************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-4226145IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
LPINPPSTHS KDTVTYRLKM SMEMMATERV CYVHCNFCNT ILAVSVPYNS LLTIVTVRCG  60
HCANLLSVNM GASLQPFPPQ DPQSQKQHLS FEEPSSKELG SSSSKCNKIA PFEAVEHEQP  120
RIPPIRPTEK RHRVPSAYNR FINKSFQVSD FAGRKSKGLR LVIQISATGR LSAPQPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0981441e-160BT098144.1 Soybean clone JCVI-FLGm-16D21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236663.12e-78uncharacterized protein LOC100500091
SwissprotQ9XFB07e-42YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0B2S3G73e-81A0A0B2S3G7_GLYSO; Putative axial regulator YABBY 2
TrEMBLI1KFH53e-81I1KFH5_SOYBN; Uncharacterized protein
STRINGGLYMA12G10210.35e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.18e-40YABBY family protein